Special

MmuEX0015064 @ mm9

Exon Skipping

Gene
ENSMUSG00000041144 | Dnahc7c
Description
dynein, axonemal, heavy chain 7B [Source:MGI Symbol;Acc:MGI:2684953]
Coordinates
chr1:46414974-46430395:+
Coord C1 exon
chr1:46414974-46415151
Coord A exon
chr1:46419748-46419851
Coord C2 exon
chr1:46430078-46430395
Length
104 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTCTTTGTTATTTAGGAG
3' ss Score
8.9
5' ss Seq
GTGGTTAGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
CAATGGTATGAGGTTGGTCCCCCTCCAGTCTTCTGGCTTTCTGGCTTCTTCTTCACACAAGCCTTCCTGACTGGTGCGCAGCAGAACTTTGCGAGAAAATTCACAATCCCAATTGATCTCCTTGGGTTTGACTATGAAGTGATGGATGACAAGGAATATAAAAATGCTCCAGAGGATG
Seq A exon
GAGTTTACATTCATGGATTGTTTTTGGATGGAGCTTCCTGGAACAGGAAGACCAAGAAACTTGCAGAATCACATCCTAAAGTTCTGTATGACACAGTCCCCGTG
Seq C2 exon
ATGTGGCTAAAGCCATGCAAAAAGTCAGACATACCCAAACGACCAAGTTATGTTGCTCCACTGTATAAGACAAGCGAGAGGAGGGGTACACTCTCCACCACTGGCCACTCCACAAATTTCGTGATTGCCATGATTCTTCCCTCTGACCAACCCAAGGAACACTGGATTGGACGGGGTGTGGCACTGCTGTGTCAACTAAACTCATAATCTGAATGTGGCATCATCTCTTGCAACTTCTTGTTAGATTGAATAAAACACATTTTACCGTTTAAATTTTGCTTTGGCTTAAATAAACTTAATGTTCTTAATTATGACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041144-'71-69,'71-68,73-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref, Alt. Stop)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.015
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0302810=Dynein_heavy=FE(14.1=100)

							
A:
PF0302810=Dynein_heavy=PD(7.3=87.3)

							
C2:
PF0302810=Dynein_heavy=PD(9.0=92.8)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000068738





     
                   









    
Main Skipping Isoform:
ENSMUSP00000092571





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000068738f5803A
          









    
Other Skipping Isoforms:
NA
  



Associated events






Conservation


Human
(hg38)
chr2:195740766-195740869 
HIGH PSI
HsaEX6017600
(DNAH7)
Human
(hg19)
chr2:196605490-196605593 
HIGH PSI
HsaEX6017600
(DNAH7)
Rat
(rn6)
chr9:60086702-60086805 
HIGH PSI
RnoEX0028585
(Dnah7)
Cow
(bosTau6)
chr2:84776047-84776150 
HIGH PSI
BtaEX6010462
(DNAH7)
Chicken
(galGal4)
chr7:9175307-9175396 
HIGH PSI
GgaEX0011162
(DNAH7)
Chicken
(galGal3)
chr7:10661770-10661873 
HIGH PSI
GgaEX0011162
(DNAH7)
Zebrafish
(danRer10)
chr9:25143735-25143838 
ALTERNATIVE
DreEX0027485
(dnah7)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CACAAGCCTTCCTGACTGGTG

				
R: 
ACGAAATTTGTGGAGTGGCCA

				
Band lengths: 
245-349

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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