RnoEX0028585 @ rn6
Exon Skipping
Gene
ENSRNOG00000060984 | Dnah7
Description
dynein, axonemal, heavy chain 7 [Source:RGD Symbol;Acc:621798]
Coordinates
chr9:60070739-60090337:-
Coord C1 exon
chr9:60090160-60090337
Coord A exon
chr9:60086702-60086805
Coord C2 exon
chr9:60070739-60070947
Length
104 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTCTTTGTTATTTAGGTG
3' ss Score
10.62
5' ss Seq
GTGGTTAGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
CAATGGTATGAGGTTGGTCCTCCTCCAGTCTTCTGGCTTTCTGGCTTCTTCTTCACACAAGCCTTCCTGACTGGTGCACAGCAGAACTATGCAAGAAAATTCACGATTCCAATTGATCTTCTTGGGTTTGACTATGAAGTGATGGATGACAAGGAATATAAAAATGCTCCTGAGGATG
Seq A exon
GTGTTTACATTCATGGATTGTTTTTGGATGGAGCTTCCTGGAACAGGAAGACCAAGAAACTTGCAGAATCACATCCTAAAGTTCTCTATGACACAGTCCCTGTG
Seq C2 exon
ATGTGGCTAAAGCCCTGTAAGAAGTCAGACATACCCAAACGACCAAGCTACGTTGCTCCACTGTATAAGACAAGTGAGAGGAGGGGCACGCTCTCCACCACTGGCCACTCCACAAATTTCGTGATTGCCATGATTCTTCCCTCTGACCAACCCAAGGAACACTGGATTGGACGGGGTGTGGCACTGCTATGTCAACTGAACTCATAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060984-'70-71,'70-70,71-71
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.3=100)
A:
PF0302810=Dynein_heavy=FE(4.8=100)
C2:
PF0302810=Dynein_heavy=PD(9.2=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAAGCCTTCCTGACTGGTG
R:
ACGAAATTTGTGGAGTGGCCA
Band lengths:
245-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]