GgaEX0011162 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9174695-9176361:-
Coord C1 exon
chr7:9176184-9176361
Coord A exon
chr7:9175307-9175410
Coord C2 exon
chr7:9174695-9174901
Length
104 bp
Sequences
Splice sites
3' ss Seq
CCCTTATACCACTGATTCAGGGG
3' ss Score
5.58
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATGTGGTATGAAAATGGAATGCCACCCGTCTTCTGGATTTCAGGATTCTTCTTCACGCAAGCGTTCTTAACAGGTGCCCAGCAGAACTATGCCAGAAAGTACACTATTCCAATAGACCTGTTAGCATTTGACTATGAAGTGCTAGAAGATAAGGAATATAAAGTGGCTCCTGAGGACG
Seq A exon
GGGTCTACATCCAGGGATTGTTCTTGGATGGAGCACGTTGGAACAGGGAAACTAAAAAGCTAGGAGAATCTCATCCAAAAATCCTCTACGATACAGTACCTGTG
Seq C2 exon
ATATGGCTAAAGCCCTGTAAGAAAGCAGACATTCCACAGCAACCCAGTTACCTGGCTCCAGTGTACAAGACCAGCGAGAGAAGAGGGATCCTGTCAACCACTGGCCATTCCACCAACTTTGTCATTGCAATGACCCTCCCTTCCGATAAACCGCAAGAACACTGGATCAAACGGGGGGTGGCGTTATTATGTCAGCTTAGTTCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.3=100)
A:
PF0302810=Dynein_heavy=FE(4.8=100)
C2:
PF0302810=Dynein_heavy=PD(9.0=92.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACCCGTCTTCTGGATTTC
R:
ATCCCTCTTCTCTCGCTGGTC
Band lengths:
247-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]