BtaEX6011286 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003472 | ABCA12
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 12 (ABCA12), mRNA. [Source:RefSeq mRNA;Acc:NM_001191294]
Coordinates
chr2:103568472-103572198:-
Coord C1 exon
chr2:103572012-103572198
Coord A exon
chr2:103569880-103570098
Coord C2 exon
chr2:103568472-103568668
Length
219 bp
Sequences
Splice sites
3' ss Seq
TATGGTTTCTTCATTTCCAGCTC
3' ss Score
9.19
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTCCTGAATACAAATTTTCCTCCAACATTGAGCCTGAACCTAAAGATCTCACAGTTGGGGTTGCTCTGCATGGGGTCACAAAGATCTATGGCTCAAAAATTGCTGTTGATAACCTCAATCTGAACTTCTATGAAGGTCATATTACTTCATTGCTGGGGCCCAATGGAGCCGGGAAGACTACCACCAT
Seq A exon
CTCCATGTTGACTGGACTGTTTGGGGCCTCGGCAGGTACCATCTTTGTTTACGGAAAAGATATCAGAACAGATCTGCACGTTGTGCGGAAGAACATGGGCGTCTGCATGCAGCATGATGTCTTGTTCAGTTACCTCACCACCAAGGAGCACCTTCTCCTCTACGGCTCCATTAAAGTTCCTCACTGGACTAAAAAGCAGCTGCATGAAGAAGTGAAAAG
Seq C2 exon
GACTTTAAAAGATACTGGACTATATAGCCATCGTCATAAGAGAGTTGGAACACTGTCAGGAGGAATGAAGAGGAAGTTATCCATATCAATAGCTCTCATCGGAGGATCAAGGGTGGTAATTCTGGATGAACCATCCACTGGCGTTGACCCATGTTCTCGGCGAAGTATATGGGATGTTATATCCAAGAACAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003472-'27-27,'27-26,28-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.4=42.9)
A:
PF0000522=ABC_tran=FE(49.7=100)
C2:
PF0000522=ABC_tran=PD(31.3=68.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACAGTTGGGGTTGCTCTG
R:
TACTTCGCCGAGAACATGGGT
Band lengths:
307-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]