GgaEX6041523 @ galGal4
Exon Skipping
Gene
ENSGALG00000003553 | ABCA12
Description
ATP-binding cassette, sub-family A (ABC1), member 12 [Source:HGNC Symbol;Acc:HGNC:14637]
Coordinates
chr7:4235900-4238725:-
Coord C1 exon
chr7:4238548-4238725
Coord A exon
chr7:4236751-4236969
Coord C2 exon
chr7:4235900-4236096
Length
219 bp
Sequences
Splice sites
3' ss Seq
TATTCATTTTTCCCTTTCAGATC
3' ss Score
12.78
5' ss Seq
GAGGTATAA
5' ss Score
5.96
Exon sequences
Seq C1 exon
GTGCCCCCCCGCCTCACCTGGAGCCAGAACCCACTGATCTCACCTTGGGAGTCTCCCTCCATGGCATAACAAAAGTTTATGGATCCAAAGCTGCAGTGGACAACCTAAGCCTCAACTTCTATGAAGGGAATATAACTTCCCTGCTGGGACACAATGGAGCCGGGAAAACTACAACCAT
Seq A exon
ATCTATTTTGACTGGGTTGTTCCCTACATCATCAGGCACTATCATTGTCTACGGCAAAGACATCAAGACTGATCAGGAAGTTATCAGGAAGAACATGGGTATCTGTATGCAGCACAACGTGCTCTTCAACTACCTTACCACGAAGGAGCACCTGCTGCTCTATGGGTACATCAAAGTCCCTCACTGGAGTAAAGAGGAGCTCTACCAAGAAGTTAAGAG
Seq C2 exon
GACTTTGAAGGAGACTGGACTCTACAGCCATCGTCATAAGCTGGCTGGTTCCCTGTCTGGTGGGATGAAGAGAAAGCTGTCTATAGCTATTGCTCTCCTGGGTGGATCAAGGGTAGTGATCCTGGATGAACCAACCACAGGGGTGGATCCGTGCTCTCGTAGGAGTATTTGGGAAATTATCTCCAAGAATAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003553-'28-32,'28-31,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.4=45.0)
A:
PF0000522=ABC_tran=FE(49.7=100)
C2:
PF0000522=ABC_tran=PD(31.3=68.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCCCTCCATGGCATAACA
R:
ACTCCTACGAGAGCACGGATC
Band lengths:
295-514
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]