DreEX6037798 @ danRer10
Exon Skipping
Gene
ENSDARG00000074749 | abca12
Description
ATP-binding cassette, sub-family A (ABC1), member 12 [Source:ZFIN;Acc:ZDB-GENE-030131-9790]
Coordinates
chr9:40936481-40941057:-
Coord C1 exon
chr9:40940874-40941057
Coord A exon
chr9:40938771-40938989
Coord C2 exon
chr9:40936481-40936677
Length
219 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTCTTTAATTTCAGGTC
3' ss Score
10.02
5' ss Seq
CAAGTATGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GAAAAGGTAGCTTGGTGGCTAAAGGAGAAGAAGACTTCTCAGGGTTGCCCGTTGGAGTCTCACTGTATGGCCTGACGAAGACCTACGGCAAGAGGAATGCTGTAGACAACCTAAACCTGTCTTTCTATGAGGGACACGTCACCTCTCTGCTGGGTCACAATGGAGCTGGAAAAACCACCACTAT
Seq A exon
GTCACTTTTGACTGGATTGTTTGCACCCACTGTCGGCACCATTGAGGTCTACGGGATGGATATGCAGATGTTCATAGATGATGTGCGCAAGGAGATGGGCGTCTGTATGCAGTATGACGTCCTGTTCGACCATCTGACCACTAAAGAGCATCTGTTACTGTACGCTCAGATCAAAGCTCCTCATTGGACCAAGCAAGAAGTGAAGGAACAAGTGCACAA
Seq C2 exon
AATCCTAATGGAAACAGACATGCATGCCCACCGGCACAAGCGTGTTGGCACTCTGTCAGGAGGCATGAAGAGAAAGTTATCCATCTCCATTGCCTTCATCGGAGGCTCGCGGCTGGTGGTGTTGGATGAGCCGACCACCGGCGTAGATCCATGTTCCCGACGCAGTATCTGGGACATTATCATACAGCACAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074749-'43-44,'43-43,44-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.4=42.2)
A:
PF0000522=ABC_tran=FE(49.7=100)
C2:
PF0000522=ABC_tran=PD(31.3=68.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCACTGTATGGCCTGACGA
R:
GATACTGCGTCGGGAACATGG
Band lengths:
296-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]