RnoEX6040223 @ rn6
Exon Skipping
Gene
ENSRNOG00000015248 | Abca12
Description
ATP binding cassette subfamily A member 12 [Source:RGD Symbol;Acc:1304586]
Coordinates
chr9:78560565-78564544:-
Coord C1 exon
chr9:78564358-78564544
Coord A exon
chr9:78561755-78561973
Coord C2 exon
chr9:78560565-78560761
Length
219 bp
Sequences
Splice sites
3' ss Seq
TATCACATCCTCCTTTCCAGCTC
3' ss Score
8.44
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTCCTGACTGTGCGTTTCCCTCCAACATTGAACCTGAACCTAAAGATCTCCAAGTTGGAGTTGCCCTTCATGGGGTCACCAAGAGCTATGGCTCAAAAACAGCTGTTGATAACCTCAACCTGAACTTCTACGAAGGGCACATCACATCATTGCTGGGACCAAATGGAGCTGGCAAAACCACAACAAT
Seq A exon
CTCCATGCTGACCGGGCTGTTTGGTGCCACGGCAGGTACCATTTTTGTCTATGGGAAAGATATCAAGACAGATCTGAATACTGTTCGGAAAAACATGGGGGTCTGCATGCAACATGATGTCTTATTCAGTTATCTCACCACCAAGGAGCACCTTCTCTTATATGGTTCCATCAAAGTCCCTCACTGGACCAAAAAGCAGCTCCACGAAGAGGTTAAAAG
Seq C2 exon
GACTTTAAAAGACACTGGACTGTACAGCCATCGCCATAAGAGAGTTGGGACGTTGTCAGGAGGGATGAAGAGGAAATTATCCATATCCATTGCCCTCATCGGTGGATCAAGGGTCGTGATTCTGGATGAACCATCCACTGGGGTTGATCCATGCTCTCGCCGAAGTATATGGGATGTCATATCCAAGAACAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015248-'35-31,'35-30,36-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PU(18.4=42.9)
A:
PF0000522=ABC_tran=FE(49.7=100)
C2:
PF0000522=ABC_tran=PD(31.3=68.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGTTGGAGTTGCCCTTCA
R:
GAGCATGGATCAACCCCAGTG
Band lengths:
294-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]