BtaEX6011477 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018543 | VIL1
Description
Bos taurus villin 1 (VIL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013591]
Coordinates
chr2:107162117-107164539:+
Coord C1 exon
chr2:107162117-107162261
Coord A exon
chr2:107162711-107162899
Coord C2 exon
chr2:107164471-107164539
Length
189 bp
Sequences
Splice sites
3' ss Seq
GACTCTGGGATGCTCCACAGGTC
3' ss Score
7.16
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GCTGCAGGAGGAAAACTTGGTCATCACTCCCCGGCTCTTTGAATGTTCCAACCAGACTGGGCGCTTCCTGGCCACAGAGATCCCTGACTTCAATCAGGATGACTTGGAAGAGGATGATGTTTTCCTGCTAGATGTCTGGGACCAG
Seq A exon
GTCTTTTTCTGGATTGGGAAGAATGCCAATGAGGACGAGAAGAAAGCCGCAGCCACCACAGTGCAGGAATATCTCAAGACCCACCCCGGCGGTCGGGACCTTGAGACCCCCATAATTGTGGTGAAGCAAGGGCACGAGCCCCCTACCTTCACAGGCTGGTTCCTGGCTTGGGATCCCTTCAAGTGGAAT
Seq C2 exon
AACTCCAAATCCTATGAGGACCTGAAGGCGGAGCTCGGAAACTCTGGGGACTGGAGCCAGATCACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018543-'19-20,'19-19,20-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.302 C2=0.174
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
PF0062617=Gelsolin=PD(63.3=79.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGGAGGAAAACTTGGT
R:
AGCAGTGATCTGGCTCCAGTC
Band lengths:
214-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]