GgaEX1063092 @ galGal4
Exon Skipping
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22033202-22033934:-
Coord C1 exon
chr7:22033790-22033934
Coord A exon
chr7:22033367-22033555
Coord C2 exon
chr7:22033202-22033270
Length
189 bp
Sequences
Splice sites
3' ss Seq
ACACGGTGACCCCGTTGCAGATT
3' ss Score
5.67
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GCTCCAGGAAGAGAATCCCTCTGTGCCCCCCCGGCTCTTTGAATGCTCTAACAAGACAGGCAGGTTCTTGGCCACTGAGATCGTCGACTTCACCCAGGATGACCTGGACGAGAACGATGTTTACCTGCTGGACACTTGGGACCAG
Seq A exon
ATTTTCTTCTGGATCGGGAAAGGTGCCAATGAGTCAGAGAAGGAGGCGGCAGCAGAGACAGCACAGGAGTACCTGCGGAGTCACCCCGGCAGCCGTGACCTCGACACCCCCATCATCGTGGTGAAGCAGGGCTTTGAACCCCCCACCTTCACTGGCTGGTTCATGGCCTGGGATCCCCTCTGCTGGAGC
Seq C2 exon
GACAGGAAATCCTACGATGAGCTGAAAGCTGAGCTGGGGGACAATGCCAGCATTGGGCAACTTGTGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433_MULTIEX1-10/11=9-11
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
PF0062617=Gelsolin=PD(63.3=79.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAGGAAGAGAATCCCTC
R:
TGACACAAGTTGCCCAATGCT
Band lengths:
214-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]