DreEX6090014 @ danRer10
Exon Skipping
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:209037-211379:-
Coord C1 exon
chr11:211235-211379
Coord A exon
chr11:209411-209599
Coord C2 exon
chr11:209037-209105
Length
189 bp
Sequences
Splice sites
3' ss Seq
CACGGCTCTCTCTCCTGCAGATA
3' ss Score
12.73
5' ss Seq
AGTGTACGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
TTTGCAGCAGGTGACTCTGGAGCACCAGCCGCGTCTCTTCGAGTGCTCCAATAAGACGGGACGCTTCACAGCCACTGAGGTCACGCAGTTCACACAGGACGACCTGCGGGAGGACGACGTCATGCTGCTGGACACCTGGGACCAG
Seq A exon
ATATTCCTCTGGATGGGGAATGAGGCCAATGATGTGGAGCGGCGCGAGTGTGTGCCTACCTGTGCCGAGTACCTGCGGACACACCCCGGCTCCAGAGACCCCGACACCCCCATTGTCATCATCAAGCAGGGCTTCGAGCCACCCACATTCACCGGCTGGTTCACTGCCTGGGACCCTAGCAAGTGGAGT
Seq C2 exon
GGAGGAAAAACGTACGAGCAGCTGAAGCAGGAGCTGGGAGATGTGACGCTGCCGAGCACCATTCAATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.175 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
PF0062617=Gelsolin=PD(63.3=79.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGCAGGTGACTCTGGA
R:
GTATTGAATGGTGCTCGGCAG
Band lengths:
214-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]