BtaEX6021841 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55996269-55998715:+
Coord C1 exon
chr5:55996269-55996413
Coord A exon
chr5:55997855-55998043
Coord C2 exon
chr5:55998647-55998715
Length
189 bp
Sequences
Splice sites
3' ss Seq
ACAGGTCTCTACAACAACAGGTG
3' ss Score
4.01
5' ss Seq
AGCGTAAGA
5' ss Score
6.21
Exon sequences
Seq C1 exon
ACTACAGCAGGAGATCCTAGATGTCCAGTCTCGTCTCTTTGAATGTTCCAATAAGACTGGCCGGTTCACTGTCACTGAGATCATAGACTTTACCCAGGACGACCTGAACCCAGGTGACGTGATGCTCCTGGATACCTGGGACCAG
Seq A exon
GTGTTCCTGTGGATCGGGGCTGAGGCCAACGCTGCAGAGAAGAAGAGTGCTCTGTCTACCGCCCAGGAGTACCTGCACACTCACCCCAGCGGCCGAGACACCGGCACACCGATCCTGATCGTTAAACAGGGATTCGAGCCTCCCATCTTCACAGGCTGGTTCCTGGCCTGGGACCCTCACGTTTGGAGC
Seq C2 exon
GCAGGGAAATCATATGAACAGTTAAAAGAAGAGCTGGGAGATGCTGTTGCTATCACAAGAATCACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
PF0062617=Gelsolin=PD(63.3=79.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAGGAGATCCTAGATGTC
R:
AGCAGTGATTCTTGTGATAGCAACA
Band lengths:
211-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]