RnoEX0013803 @ rn6
Exon Skipping
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70304567-70306584:+
Coord C1 exon
chr7:70304567-70304711
Coord A exon
chr7:70305849-70305923
Coord C2 exon
chr7:70306516-70306584
Length
75 bp
Sequences
Splice sites
3' ss Seq
TATGACATCTGTACTCCTAGGTG
3' ss Score
7.42
5' ss Seq
CTGGTAACA
5' ss Score
4.6
Exon sequences
Seq C1 exon
GCTGCAGCAGGAAACCCTGGACATCCAGGTCCGGCTTTTTGAATGTTCTAATAAGACCGGCCGGTTCCTTGTTACTGAGGTCACGGACTTCACCCAGGATGACCTGAGCCCAGGTGATGTGATGCTCCTGGACACCTGGGACCAG
Seq A exon
GTGTTCCTGTGGATAGGAGCGGAGGCCAATGCCACAGAGAAGGAGGGGGCCCTCTCGACTGCTCAGGAGTACCTG
Seq C2 exon
GAAGGAAAATCATATGAGCAGTTAAAGAACGAGCTGGGAGATGCCACTGCTATCGTGCGAATCACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419-'19-19,'19-18,20-19
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.222 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
PF0062617=Gelsolin=PD(63.3=79.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCCAGGTCCGGCTTTTT
R:
CACGATAGCAGTGGCATCTCC
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]