MmuEX0007141 @ mm10
Exon Skipping
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:127014099-127017032:+
Coord C1 exon
chr10:127014099-127014243
Coord A exon
chr10:127016310-127016498
Coord C2 exon
chr10:127016964-127017032
Length
189 bp
Sequences
Splice sites
3' ss Seq
ATATGAAATCGGTGCGACAGGTG
3' ss Score
4.58
5' ss Seq
AGCGTAAGA
5' ss Score
6.21
Exon sequences
Seq C1 exon
GCTGCAGCAAGAAACCCTGGACGTCCAGGTCCGGCTCTTTGAGTGTTCCAATAAGACTGGCCGCTTCCTTGTTACGGAGGTCACGGACTTCACCCAGGAGGACCTGAGCCCAGGTGATGTGATGCTTCTGGACACCTGGGACCAG
Seq A exon
GTGTTCTTGTGGATAGGAGCGGAGGCCAATGCCACGGAGAAGAAGGGGGCCCTCTCGACGGCTCAGGAGTACCTGGTCACACATCCTAGTGGCCGAGACCCCGACACACCGATTCTGATCATCAAACAGGGCTTTGAGCCCCCCACCTTCACAGGCTGGTTCCTGGCATGGGACCCTCACATTTGGAGC
Seq C2 exon
GAAGGAAAATCATATGAGCAGCTAAAGAACGAGCTGGGAGATGCAACTGCCATTGTGCGAATCACCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-'24-23,'24-22,26-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.159 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(34.2=55.1)
A:
PF0062617=Gelsolin=PD(63.3=79.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGCAAGAAACCCTGG
R:
GTGATTCGCACAATGGCAGTT
Band lengths:
210-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types