MmuEX6025302 @ mm10
Exon Skipping
Gene
ENSMUSG00000026175 | Vil1
Description
villin 1 [Source:MGI Symbol;Acc:MGI:98930]
Coordinates
chr1:74427479-74430685:+
Coord C1 exon
chr1:74427479-74427623
Coord A exon
chr1:74428067-74428255
Coord C2 exon
chr1:74430617-74430685
Length
189 bp
Sequences
Splice sites
3' ss Seq
GGCTGTGGGGCTCTCCACAGGTC
3' ss Score
8.59
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GCTGCAGGAGGAAAACCAAGTCATCACTCCTCGGCTCTTCGAGTGCTCCAACCAGACCGGACGCTTTCTGGCCACAGAGATCTTTGACTTCAATCAGGATGACCTGGAGGAGGAGGATGTGTTCCTATTGGATGTCTGGGACCAG
Seq A exon
GTCTTCTTCTGGATAGGGAAACATGCCAATGAGGAAGAGAAGAAGGCTGCAGCTACAACTGTACAAGAATACCTCAAGACCCACCCTGGAAACCGAGACCTTGAGACCCCTATCATCGTGGTGAAGCAGGGACACGAGCCCCCCACCTTCACAGGCTGGTTCCTGGCTTGGGATCCCTTCAAGTGGAGT
Seq C2 exon
AACACCAAATCCTATGATGACCTTAAGGCAGAGCTGGGAAACTCTGGGGACTGGAGCCAGATTGCTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026175-'35-34,'35-31,36-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.222 C2=0.033
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(33.3=53.1)
A:
PF0062617=Gelsolin=PD(64.1=79.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGGAGGAAAACCAAGT
R:
GTCAGCAATCTGGCTCCAGTC
Band lengths:
214-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types