BtaEX6011485 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018543 | VIL1
Description
Bos taurus villin 1 (VIL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001013591]
Coordinates
chr2:107155171-107156382:+
Coord C1 exon
chr2:107155171-107155249
Coord A exon
chr2:107155428-107155526
Coord C2 exon
chr2:107156229-107156382
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGCTTTCTCTCCCGCTCCAGGAC
3' ss Score
10.87
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
Exon sequences
Seq C1 exon
TGTGTCTGACTCAGAGGGAAAGGTGGTGGTCAGAGAAATCGCCACGCAGCCACTCACACAAGACCTGCTCAGTCACGAG
Seq A exon
GACTGTTACATCCTGGACCAGGGAGGCCTAAAGATCTATGTGTGGAAGGGGAAGAATGCCAACGCCCAGGAGAAGAAGGAAGCCATGAACCAGGCACTG
Seq C2 exon
AACTTTATCAAAGCGAAGCAGTACCCGCCGAGCACACAGGTGGAGCTGCAGAACGACGGGGCCGAGTCAGCTGTCTTTCAGCAGCTCTTCCAGAAGTGGACAGTACCCAACCGGACCACCGGCCTAGGCAAAACCCACACCGTGGGCTCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018543-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.077
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(19.7=55.6)
A:
PF0062617=Gelsolin=FE(42.1=100)
C2:
PF0062617=Gelsolin=PD(34.2=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGGGAAAGGTGGTGGTC
R:
CCACTTCTGGAAGAGCTGCTG
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]