RnoEX6040337 @ rn6
Exon Skipping
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81701532-81702927:+
Coord C1 exon
chr9:81701532-81701610
Coord A exon
chr9:81701765-81701863
Coord C2 exon
chr9:81702774-81702927
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTCTATTGGCTCTAGGAC
3' ss Score
9.79
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
TGTGTCTGATTCAGAAGGAAAAATGGTGGTTAGAGAAGTTGCTACTCAGCCACTCACACAGGACTTGCTCAGCCATGAG
Seq A exon
GACTGTTACATCCTGGACCAGGGAGGCCTGAAGATCTTTGTGTGGAAGGGAAAAAATGCCAATGCCCAGGAGAGGAGCGGAGCCATGAACCAGGCTTTG
Seq C2 exon
AACTTCATCAAAGCCAAGCAGTACCCACCTAGCACGCAGGTTGAGGTGCAGAATGATGGGGCTGAGTCCGCCATTTTCCAGCAGCTCTTCCAGAAGTGGACAGTGCCCAATCGGACCTCAGGCCTTGGCAAAACCCACACAGTGGGCTCTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.030 C2=0.077
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(21.8=63.0)
A:
PF0062617=Gelsolin=FE(41.0=100)
C2:
PF0062617=Gelsolin=PD(33.3=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTCACACAGGACTTGCTC
R:
CACTGTGTGGGTTTTGCCAAG
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]