DreEX6090007 @ danRer10
Exon Skipping
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:213405-214876:-
Coord C1 exon
chr11:214798-214876
Coord A exon
chr11:214426-214524
Coord C2 exon
chr11:213405-213558
Length
99 bp
Sequences
Splice sites
3' ss Seq
GGTTTGCTTTGTTTTTGGAGGAC
3' ss Score
-1.27
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
TGTGTCAGATGCCAACGGGACGATGCAGATCACCGAGATCGCAACCAGTCCACTAACCCAGGACCTGCTGAATCATGAC
Seq A exon
GACTGCTACATCTTGGACCAGGGGGGCGTGTCCATCTTCGTGTGGAAGGGAAAGATGGCCAATAAGGCGGAGAGACAAGCAGCGATGACCCGAGCTCTG
Seq C2 exon
GAGTTCATCAAGCTGAAGAATTACCCGCTCAGCACCAAAGTGGAGTCCATCTGTGACGGAGGAGAATCAGCTCTGTTCAAGCAGCTCTTCAAGAACTGGACAGTCAAAGACCAGACGCAGGGCCTGGGCCGCACACACACTGTTGGAAAAATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342-'7-9,'7-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.000 C2=0.058
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(20.8=59.3)
A:
PF0062617=Gelsolin=FE(41.6=100)
C2:
PF0062617=Gelsolin=PD(33.8=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACCGAGATCGCAACCAG
R:
GCGTCTGGTCTTTGACTGTCC
Band lengths:
170-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]