RnoEX0013804 @ rn6
Exon Skipping
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70299795-70300924:+
Coord C1 exon
chr7:70299795-70299873
Coord A exon
chr7:70299980-70300078
Coord C2 exon
chr7:70300771-70300924
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTCTCCCTGCCTGATTCAGGAC
3' ss Score
9.8
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
Exon sequences
Seq C1 exon
TGTCTCCGACACAACTGGGCAGCTGTCGGTCACAGAAGTGGCAACAAGGCCCCTGGTCCAGGAGCTACTGAACCATGAT
Seq A exon
GACTGCTATATCCTGGACCAAAGTGGCACCAAGATCTACGTATGGAAAGGCAAAGGAGCCACCAAGGTGGAGAAACAGGCGGCCATGTCCAAAGCCCTG
Seq C2 exon
GATTTCATCAAGATGAAGGGTTATCCCAGCAGCACCAACGTAGAGACCGTCAACGATGGCGCAGAGTCGGCCATGTTCAAACAGTTGTTCCAGAAATGGTCGGTGAAGGACCAGACCACTGGCTTGGGGAAAACATTCAGCATTGGTAAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(21.8=63.0)
A:
PF0062617=Gelsolin=FE(41.0=100)
C2:
PF0062617=Gelsolin=PD(33.3=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCAGGAGCTACTGAACC
R:
GCTGAATGTTTTCCCCAAGCC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]