BtaEX6021849 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55991029-55992157:+
Coord C1 exon
chr5:55991029-55991107
Coord A exon
chr5:55991236-55991334
Coord C2 exon
chr5:55992004-55992157
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCCCTGGCCATCTGCTTCAGGAC
3' ss Score
7.7
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
Exon sequences
Seq C1 exon
TGTCTCGGATTCATCTGGGCAGCTGGTGGTCACAGAGGTAGCGACGAGGCCTCTGGTCCAGGACTTACTGAATCCTGAT
Seq A exon
GACTGCTACATCCTGGACCAAAGTGGAACCAAGATCTATGTGTGGAAAGGAAGAGGAGCCACAAAGGTTGAGAAACAGATGGCCATGTCTAAAGCCCTG
Seq C2 exon
GACTTCATCAGGATGAAGGGCTACCCCAGCAGCACCAACGTGGAGACCGTCAATGACGGTGCCGAGTCAGCCATGTTCAAGCAGCTGTTCCAGAAGTGGACGGTGAAGGAACAGACCGTGGGTCTGGGGAAAACGTTCAGCGTGGGTAAAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(21.8=63.0)
A:
PF0062617=Gelsolin=FE(41.0=100)
C2:
PF0062617=Gelsolin=PD(33.3=50.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGTGGTCACAGAGGTAG
R:
TCTGTTCCTTCACCGTCCACT
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]