GgaEX1063094 @ galGal3
Exon Skipping
Gene
ENSGALG00000011433 | VIL1
Description
NA
Coordinates
chr7:24091580-24092124:-
Coord C1 exon
chr7:24092046-24092124
Coord A exon
chr7:24091824-24091922
Coord C2 exon
chr7:24091580-24091733
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCTGTCATCCCCCCTCTCAGGAC
3' ss Score
8.31
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGTCTCTGATGCCAGTGGGAACCTGGTCATACAAGAGGTAGCAATTCGCCCCTTGACTCAAGACATGCTCCAGCATGAG
Seq A exon
GACTGCTACATCCTTGATCAAGCAGGTCTCAAGATCTTTGTGTGGAAGGGCAAGAATGCCAACAAGGAGGAGAAGCAGCAGGCAATGAGCAGGGCCCTG
Seq C2 exon
GGCTTCATCAAAGCCAAGAACTACCCGGCCAGCACCAGCGTGGAGACAGAGAACGATGGGTCTGAGTCCGCTGTCTTCAGGCAGCTCTTCCAAAAATGGACTGTTCCCAACCAAACCAGTGGGCTGGGCAAGACCCATACTGTGGGCAAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.173
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(21.8=63.0)
A:
PF0062617=Gelsolin=FE(41.0=100)
C2:
PF0062617=Gelsolin=PD(33.3=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAGGTAGCAATTCGCCC
R:
CCACTGGTTTGGTTGGGAACA
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]