BtaEX6011941 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021310 | COL4A4
Description
collagen, type IV, alpha 4 [Source:HGNC Symbol;Acc:HGNC:2206]
Coordinates
chr2:116029121-116032288:-
Coord C1 exon
chr2:116032220-116032288
Coord A exon
chr2:116029823-116029930
Coord C2 exon
chr2:116029121-116029339
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTTTATTGTTTAGGTC
3' ss Score
10.52
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
GTGATACAATTCCTTGTAACGTAACATACCCTGGGAGGCCAGGCCCTCCAGGTTTTGATGGTCCTCCAG
Seq A exon
GTCCAAAGGGACTTCCAGGTCATCGGGGTGCTCCTGGGCTGAGGTGTTTGGATGGACAGAAGGGTCAACGTGGCAAACCAGGAATCTCAGAAAGACCTGGTCCACCTG
Seq C2 exon
GTTTTCGTGGTGATATAGGAGAACCAGGTTTGGGAGGTGAAAAGGGGTCCTCGCCTGTTGGGCCCCCAGGCACTCCAGGTTCACCTGGAGTGAATGGTCAGAAAGGACCCCCAGGAGATCCTGCTATCGGCTACCCAGGACTCCCGGGAAAGAGCGGTCTTCCAGGAGCACCAGGGTCCAAAGGACTCAGAGGCGATGCCGGGCGTCCAGGGACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021310-'29-35,'29-34,30-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(6.5=16.7),PF0139113=Collagen=PU(25.8=66.7)
A:
PF0139113=Collagen=FE(58.1=100),PF0139113=Collagen=PU(29.0=48.6)
C2:
PF0139113=Collagen=PD(14.5=12.2),PF0139113=Collagen=PD(69.4=58.1),PF0139113=Collagen=PU(63.2=74.3),PF0139113=Collagen=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACATACCCTGGGAGGCCAG
R:
ATCGCCTCTGAGTCCTTTGGA
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]