MmuEX6025759 @ mm10
Exon Skipping
Gene
ENSMUSG00000067158 | Col4a4
Description
collagen, type IV, alpha 4 [Source:MGI Symbol;Acc:MGI:104687]
Coordinates
chr1:82492448-82495839:-
Coord C1 exon
chr1:82495771-82495839
Coord A exon
chr1:82493493-82493600
Coord C2 exon
chr1:82492448-82492666
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTTTATTTGCTCTTACTTAGGTC
3' ss Score
8.27
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTGACTCCATTCTGTGTAATGTAAGCTACCCGGGAAAACCAGGTCTGCCAGGTCTTGATGGACCTCCAG
Seq A exon
GTCTGAAGGGGTTTCCAGGCCCCCCAGGGGCTCCTGGTATGAGATGTCCAGATGGGCAGAAAGGCCAGCGGGGCAAACCGGGAATGTCTGGGATTCCAGGTCCACCTG
Seq C2 exon
GTTTTCGTGGTGACATGGGAGATCCAGGCATCAAAGGTGAAAAGGGGACCTCCCCTATTGGACCCCCAGGCCCACCTGGGTCTCCTGGAAAGGATGGCCAGAAAGGAATCCCAGGAGACCCTGCATTTGGTGACCCAGGACCCCCTGGAGAGAGGGGTCTTCCAGGAGCACCAGGCATGAAAGGACAGAAAGGTCACCCAGGGTGCCCAGGGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067158-'39-41,'39-40,40-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(4.8=12.5),PF0139113=Collagen=PU(21.7=62.5)
A:
PF0139113=Collagen=FE(52.2=100)
C2:
PF0139113=Collagen=PD(44.7=56.8),PF0139113=Collagen=PU(88.6=83.8),PF0139113=Collagen=PU(55.0=44.6),PF0139113=Collagen=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTAATGTAAGCTACCCGGGA
R:
GTCCTTTCATGCCTGGTGCTC
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types