BtaEX6012176 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011390 | CHRND
Description
Bos taurus cholinergic receptor, nicotinic, delta (CHRND), mRNA. [Source:RefSeq mRNA;Acc:NM_174271]
Coordinates
chr2:120976715-120978108:+
Coord C1 exon
chr2:120976715-120976870
Coord A exon
chr2:120977036-120977145
Coord C2 exon
chr2:120977908-120978108
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTGCCCTCTGCCCTCCCCAGTTC
3' ss Score
9.35
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
CAATGACGGCTCCTTCCAGATCTCCTATTCCTGCAACGTGCTCATCTACCCCTCGGGCTCCGTCTACTGGCTGCCACCCGCCATCTTCCGTTCTTCCTGCCCCATCTCTGTCACCTACTTCCCCTTCGACTGGCAGAACTGCTCCCTCAAGTTCAG
Seq A exon
TTCGCTCAAGTACACGACCAAGGAGATCACCCTGAGCCTGAAGCAGGCTGAAGAAGATGGCCGCTCTTACCCCGTGGAGTGGATCATCATCGATCCCGAGGGCTTCACAG
Seq C2 exon
AGAACGGGGAATGGGAGATAGTGCACCGGCCAGCCAGGGTCAACGTGGACCCCAGTGTGCCGCTGGACAGTCCTAACCGCCAGGACGTCACCTTCTACCTCATTATCCGCCGCAAACCGCTCTTCTACGTCATCAACATCCTGGTGCCCTGTGTGCTCATCTCTTTCATGATCAACCTGGTCTTCTACTTGCCAGCCGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011390-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(23.5=100)
A:
PF0293118=Neur_chan_LBD=FE(16.7=100)
C2:
PF0293118=Neur_chan_LBD=PD(17.6=57.4),PF0293211=Neur_chan_memb=PU(8.9=30.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCATCTCTGTCACCTACT
R:
GTCGGCTGGCAAGTAGAAGAC
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]