GgaEX6046375 @ galGal3
Exon Skipping
Gene
ENSGALG00000007899 | F1NJ26_CHICK
Description
NA
Coordinates
chr9:16707180-16707833:+
Coord C1 exon
chr9:16707180-16707335
Coord A exon
chr9:16707426-16707541
Coord C2 exon
chr9:16707633-16707833
Length
116 bp
Sequences
Splice sites
3' ss Seq
ACCTGTACGCTACGTTTCAGCTC
3' ss Score
5.17
5' ss Seq
CGGGTATCG
5' ss Score
4.71
Exon sequences
Seq C1 exon
CAATGACGGGCTCTTTGAAGTTGCCTACTACTGCAACGTGCTGGTCTACAACACTGGCTACGTCTACTGGCTGCCCCCCGCCATCTTCCGCAGCGCCTGCCCCATCAATGTCAACTTCTTCCCCTTTGATTGGCAGAACTGCACCCTCAAATTCAG
Seq A exon
CTCATTGGCATACAATGCACAGGAGATCAACATGCACCTGAAGGAGGAGAGTGACCCAGAGACCGAAAAGAATTACCGGGTGGAGTGGATCATCATTGACCCCGAAGGCTTCACGG
Seq C2 exon
AAAATGGCGAATGGGAAATCATCCACCGCCCGGCCCGCAAGAACATCCACCCCAGCTACCCCACTGAGAGCAGCGAGCACCAGGACATCACCTTCTACCTCATCATCAAGCGCAAGCCACTCTTCTACGTCATCAACATCGTCACACCCTGCGTCCTCATTGCCTTCATGGCCATCCTTGTCTTCTACCTGCCTGCTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007899-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.025 C2=0.015
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(23.2=100)
A:
PF0293118=Neur_chan_LBD=FE(17.4=100)
C2:
PF0293118=Neur_chan_LBD=PD(17.4=57.4),PF0293211=Neur_chan_memb=PU(9.0=30.9),PF0000317=7tm_3=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAACGTGCTGGTCTACAA
R:
GTAGAAGAGTGGCTTGCGCTT
Band lengths:
254-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]