RnoEX6040757 @ rn6
Exon Skipping
Gene
ENSRNOG00000019527 | Chrnd
Description
cholinergic receptor nicotinic delta subunit [Source:RGD Symbol;Acc:2352]
Coordinates
chr9:94288328-94291194:+
Coord C1 exon
chr9:94288328-94288483
Coord A exon
chr9:94288683-94288792
Coord C2 exon
chr9:94290994-94291194
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACAGCCACTGTTCTCTCCAGTTC
3' ss Score
6.06
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
CAATGACGGCTCATTCCAGATTTCTTACGCCTGCAATGTGCTTGTTTCTGACTCGGGCCATGTGACCTGGCTGCCACCCGCCATCTTCCGCTCCTCCTGCCCCATCTCGGTCACCTACTTCCCTTTTGATTGGCAGAACTGCTCCCTCAAATTCAG
Seq A exon
TTCACTCAAGTATACCGCCAAGGAGATCAGACTTAGCCTGAAGCAGGAGGAGGAAGACAACCGCAGTTACCCCATCGAGTGGATCATCATTGACCCTGAGGGTTTCACAG
Seq C2 exon
AGAACGGTGAGTGGGAAATAGTTCACCGGGCAGCCAAGGTCAACGTGGACCCCAGTGTCCCAATGGACAGCACCAACCACCAAGACGTCACCTTCTACCTCATCATCCGCCGCAAGCCGCTCTTCTACATCATCAACATCCTGGTACCCTGTGTGCTCATCTCCTTCATGATCAACCTGGTCTTCTACCTGCCAGGCGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019527-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(23.4=100)
A:
PF0293118=Neur_chan_LBD=FE(16.7=100)
C2:
PF0293118=Neur_chan_LBD=PD(17.6=57.4),PF0293211=Neur_chan_memb=PU(8.9=30.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTTCTGACTCGGGCCATG
R:
TGATGTAGAAGAGCGGCTTGC
Band lengths:
247-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]