BtaEX6012181 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045943 | CHRNG
Description
Bos taurus cholinergic receptor, nicotinic, gamma (muscle) (CHRNG), mRNA. [Source:RefSeq mRNA;Acc:NM_174273]
Coordinates
chr2:120992031-120993378:+
Coord C1 exon
chr2:120992031-120992145
Coord A exon
chr2:120992840-120993056
Coord C2 exon
chr2:120993245-120993378
Length
217 bp
Sequences
Splice sites
3' ss Seq
AGCCGCGCACATCTCTCCAGGTG
3' ss Score
7.1
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GTACCTGACCTTCCTCCTGGTGGTGACCATCCTCATTGTCGTGAACGCTGTGGTCGTACTCAACGTGTCTTTGCGGTCCCCCCACACACACTCCATGGCCCGAGGGGTCCGCAAG
Seq A exon
GTGTTCCTGCGGCTCTTGCCCCAGCTGTTACGGATGCACGTTCGCCCACTGGCCCCAGTGGCTGTGCAGGATGCCCACCCCCGTCTACAGAATGGTTCCTCCTCAGGGTGGCCAATCACAGCTGGGGAGGAGGTGGCCCTCTGCCTGCCCCGCAGTGAGCTTCTTTTCCGGCAGCGCCAGCGCAATGGGCTGGTGAGGGCAGCGCTGGAGAAGCTTG
Seq C2 exon
AGAAAGGCCCAGAGTCAGGGCAGAGCCCAGAATGGTGTGGCAGCCTGAAGCAGGCCGCCCCGGCCATCCAGGCCTGCGTGGAGGCCTGCAACCTCATTGCCCGTGCCCGGCACCAGCAGACTCACTTTGACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045943-'12-16,'12-14,13-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.067
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(15.4=100)
A:
PF0293211=Neur_chan_memb=FE(29.1=100)
C2:
PF0293211=Neur_chan_memb=FE(17.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCTGACCTTCCTCCTGGT
R:
TCAAAGTGAGTCTGCTGGTGC
Band lengths:
245-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]