MmuEX6026018 @ mm9
Exon Skipping
Gene
ENSMUSG00000026253 | Chrng
Description
cholinergic receptor, nicotinic, gamma polypeptide [Source:MGI Symbol;Acc:MGI:87895]
Coordinates
chr1:89106339-89107611:+
Coord C1 exon
chr1:89106339-89106453
Coord A exon
chr1:89107099-89107315
Coord C2 exon
chr1:89107478-89107611
Length
217 bp
Sequences
Splice sites
3' ss Seq
CACAACAACCCCTCTCACAGGTG
3' ss Score
6.52
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GTACCTGACCTTCCTCATGGTGGTGACCATCCTCATCGTCGTGAACTCTGTGGTCGTGCTCAATGTGTCCTTGCGGTCCCCCCACACACACTCCATGGCCCGTGGGGTCCGCAAG
Seq A exon
GTGTTCCTGAGGCTCCTGCCCCAGCTGTTACGGATGCATGTGCGCCCACTAGCTCCAGCTGCTGTCCAGGATGCCCGGTTCCGACTCCAGAATGGCTCTTCCTCAGGGTGGCCCATCATGGCTCGAGAGGAAGGGGACCTCTGTCTGCCTCGAAGCGAACTCCTCTTTAGGCAAAGGCAGCGCAATGGATTAGTGCAGGCAGTATTGGAGAAGCTAG
Seq C2 exon
AGAATGGTCCAGAAGTGAGGCAGAGCCAGGAGTTCTGTGGCAGCCTGAAGCAAGCCTCCCCAGCCATCCAGGCCTGTGTGGATGCCTGTAACCTCATGGCTCGTGCCCGACGCCAGCAGAGTCACTTTGACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026253-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(15.4=100)
A:
PF0293211=Neur_chan_memb=FE(29.1=100)
C2:
PF0293211=Neur_chan_memb=FE(17.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACCTTCCTCATGGTGG
R:
GTCAAAGTGACTCTGCTGGCG
Band lengths:
244-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: