GgaEX6046377 @ galGal3
Exon Skipping
Gene
ENSGALG00000007906 | F1NJ22_CHICK
Description
NA
Coordinates
chr9:16713355-16714102:+
Coord C1 exon
chr9:16713355-16713469
Coord A exon
chr9:16713694-16713898
Coord C2 exon
chr9:16713969-16714102
Length
205 bp
Sequences
Splice sites
3' ss Seq
GGTCGTGTCCACGTTTCCAGGTG
3' ss Score
7.93
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GTACCTGACCTTCCTCATGGTGGTGACAGTGGTGATTGTGGTGAACGCCGTCATCGTCCTCAACGTCTCACTGAGAACACCCAACACTCACTCCATGTCTCAGAGGGTGCGCCAG
Seq A exon
GTGTGGCTGCACCTCCTGCCCCGCTATCTGGGCATGCACATGCCAGAGGAGGCCCCGGGGCCACCGCAAGCCACCCGGCGACGTAGTTCCCTGGGGCTGATGGTGAAAGCTGATGAGTACATGCTATGGAAAGCCCGGACCGAGCTTCTCTTTGAGAAGCAGAAGGAGAGGGATGGACTGATGAAAACCGTGCTGGAGAAGATTG
Seq C2 exon
GACGTGGCCTGGAAAGCAACTGTGCACAGGACTTCTGCCAGAGCCTGGAGGAGGCGAGCCCAGAGATCCGGGCATGCGTTGAGGCCTGCAACCACATTGCCAACGCCACGCGGGAGCAAAATGACTTCAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007906-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.174 C2=0.044
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(15.6=100)
A:
PF0293211=Neur_chan_memb=FE(28.0=100)
C2:
PF0293211=Neur_chan_memb=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACCTTCCTCATGGTGG
R:
GCTGAAGTCATTTTGCTCCCG
Band lengths:
244-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]