BtaEX6012187 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000045943 | CHRNG
Description
Bos taurus cholinergic receptor, nicotinic, gamma (muscle) (CHRNG), mRNA. [Source:RefSeq mRNA;Acc:NM_174273]
Coordinates
chr2:120988439-120989187:+
Coord C1 exon
chr2:120988439-120988534
Coord A exon
chr2:120988740-120988879
Coord C2 exon
chr2:120989143-120989187
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTCACCGCTGTTTGCTCCAGGGG
3' ss Score
8.99
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
AACTGCAGTCCCACCCCGTCCCTACGGAGAACTGTGGCACCATGTGCGGGGGCCAGAGGCCACTGTTCCTTCTGCCGCTGCTAGCTGTCTGCTTGG
Seq A exon
GGGCCAAGGGCCGGAACCAGGAGGAGCGTCTGCTCGGGGACCTGATGCAAGGCTACAACCCCCACCTGAGACCTGCTGAGCACGATTCGGACGTGGTCAACGTCAGCCTGAAGCTCACGCTTACCAACCTCATCTCCCTG
Seq C2 exon
AATGAGCGAGAGGAGGCCCTCACCACCAACGTCTGGATAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000045943-'1-1,'1-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.1=83.0)
C2:
PF0293118=Neur_chan_LBD=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCAGTCCCACCCCG
R:
CAGACGTTGGTGGTGAGGG
Band lengths:
131-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]