DreEX6028960 @ danRer10
Exon Skipping
Gene
ENSDARG00000086647 | chrng
Description
cholinergic receptor, nicotinic, gamma [Source:ZFIN;Acc:ZDB-GENE-030131-3805]
Coordinates
chr2:45228491-45231956:+
Coord C1 exon
chr2:45228491-45228626
Coord A exon
chr2:45230730-45230866
Coord C2 exon
chr2:45231912-45231956
Length
137 bp
Sequences
Splice sites
3' ss Seq
GACTTGTTTTCGTCTTTCAGGAG
3' ss Score
10.27
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
TGCGTTTCCCATCACAAAACACCCACTAGGTACTGGAGAGCCTTCAACATTAATGTTTCTCTCAGGATTTCAACCATGGATCAAAACCTTTCCTCAAAAATCATCTGGTTATGGATCCTCCTGTTTCGCTTCTCTG
Seq A exon
GAGCTCTCTGTAATCTGGAAGGATCCCTGCACAGAGATCTCATGGTGGGATACAACAAGAACATACGACCTGTGGAGAGCCATGAAGACATCATTGATGTGAAGATCAAGATGACCCTCACCAACCTCATTTCTCTG
Seq C2 exon
AATGAGAAAGAGGAGACGCTCACTACTTGTGTTTGGATTGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086647-'1-3,'1-1,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(17.7=84.8)
C2:
PF0293118=Neur_chan_LBD=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTTCCCATCACAAAACACC
R:
ACAAGTAGTGAGCGTCTCCTCT
Band lengths:
165-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]