MmuEX6026024 @ mm10
Exon Skipping
Gene
ENSMUSG00000026253 | Chrng
Description
cholinergic receptor, nicotinic, gamma polypeptide [Source:MGI Symbol;Acc:MGI:87895]
Coordinates
chr1:87204657-87206512:+
Coord C1 exon
chr1:87204657-87204704
Coord A exon
chr1:87206075-87206214
Coord C2 exon
chr1:87206468-87206512
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACCCCCTCCTTCTGTTGCAGGGG
3' ss Score
11.77
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
CACTGGCCAGAATGTTTGAAATAGTTGGCCACATGACAGGTGGCCCAA
Seq A exon
GGGCCCAGAGCCGCAACCAAGAGGAGCGTCTGCTTGCGGACCTGATGCGAAACTACGACCCCCACCTGCGGCCGGCTGAGCGCGACTCAGATGTGGTCAATGTCAGCCTGAAGCTTACCTTGACCAACCTCATCTCCCTG
Seq C2 exon
AATGAACGAGAGGAGGCCCTCACAACTAACGTCTGGATAGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026253-'1-15,'1-4,2-15=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=0.113 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.1=83.0)
C2:
PF0293118=Neur_chan_LBD=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGCCAGAATGTTTGAAA
R:
CTCTATCCAGACGTTAGTTGTGAGG
Band lengths:
90-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types