MmuEX6026024 @ mm9
Exon Skipping
Gene
ENSMUSG00000026253 | Chrng
Description
cholinergic receptor, nicotinic, gamma polypeptide [Source:MGI Symbol;Acc:MGI:87895]
Coordinates
chr1:89102386-89103087:+
Coord C1 exon
chr1:89102386-89102454
Coord A exon
chr1:89102650-89102789
Coord C2 exon
chr1:89103043-89103087
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACCCCCTCCTTCTGTTGCAGGGG
3' ss Score
11.77
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
AGAACTGAGGCACCATGCAAGGGGGCCAGAGACCTCAGCTCCTCTTGCTGCTGTTGGCTGTCTGCCTGG
Seq A exon
GGGCCCAGAGCCGCAACCAAGAGGAGCGTCTGCTTGCGGACCTGATGCGAAACTACGACCCCCACCTGCGGCCGGCTGAGCGCGACTCAGATGTGGTCAATGTCAGCCTGAAGCTTACCTTGACCAACCTCATCTCCCTG
Seq C2 exon
AATGAACGAGAGGAGGCCCTCACAACTAACGTCTGGATAGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026253-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.1=83.0)
C2:
PF0293118=Neur_chan_LBD=FE(14.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTGAGGCACCATGC
R:
CATCTCTATCCAGACGTTAGTTGTGA
Band lengths:
114-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: