BtaEX6014602 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012094 | SCAMP3
Description
secretory carrier membrane protein 3 [Source:HGNC Symbol;Acc:HGNC:10565]
Coordinates
chr3:15432100-15433452:+
Coord C1 exon
chr3:15432100-15432273
Coord A exon
chr3:15432609-15432686
Coord C2 exon
chr3:15433330-15433452
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCGCAGTTCTCTGCCCACAGGAC
3' ss Score
8.54
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGCGGACCGAGAAGAGCGGAGCGGAGGGAGCTCTGAGAGCCGCTGCCGCCGCCACTGCCGCGGCAGGGGCGTGGAGGGCAGGGGGCGGCCCAAGCCGAAGTTGCAAACATGGCTCAAGGCAGAGACGGTGGAAACCCTTTCGCCGAGCCCGGCGAGCTTGACAACCCCTTTCAG
Seq A exon
GACCCAGCTGTGATCCAGCATCGACCCAGCACGCACTATGCTACTCTTGACGTCTACAACCCTTTTGAGACCCGGGAG
Seq C2 exon
CCACCAGCAAGCTATGAGCCTCCTGCCCCTGTTCCGATAGCTCCACCCTCAGCTCCACCCTTGCAGTCCTCAAGAAAACTCAGCCCCACAGAACCCAAGAACTATGGCTCCTACAGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012094-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF049918=LicD=PU(28.3=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCAAACATGGCTCAAGGC
R:
GGTTCTGTGGGGCTGAGTTTT
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]