RnoEX0021835 @ rn6
Exon Skipping
Gene
ENSRNOG00000020500 | Clk2
Description
CDC-like kinase 2 [Source:RGD Symbol;Acc:1359711]
Coordinates
chr2:188489362-188491242:+
Coord C1 exon
chr2:188489362-188489536
Coord A exon
chr2:188489872-188489949
Coord C2 exon
chr2:188491023-188491242
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGCCCAGTCTCTGCTCTCAGGAC
3' ss Score
6.44
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGGGAAGCGAGTGGACCAAGCACACCGGAGGGAGTTCTTTGGGCCACCACCGCCGTACTGCCGCGGCAGGGGCGTGGAGGGCAGGGGAGGCCCGGGCTCGCTTGCAAACATGGCTCAGAACAGAGACGGCGGGAATCCATTCCCTGACTCCGGCGAGCTTGACAATCCCTTTCAG
Seq A exon
GACCCAGCTGTGATCCAGCACCGACCCAGCCAGCAGTATGCCACGCTTGACGTCTACAACCCCTTTGAGAACCGAGAG
Seq C2 exon
GGAAATGCTGCTCACTTGGGTGATGCTTTCACGCATACTAGATCACTGAGTTACAGGGGACGAGGTGATGTCTAAGGCTTGTCTCCAGCAGCCCCCACCAGCCTATGAGCCTCCTGCCCCAGCCCCAGCCCCTCTGCCGCCACCCTCAGCTCCTTCTGTACAGTCCTCAAGAAAGCTCAGCCCCGCAGAGCCCAAGAACTACGGCTCCTACAGCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020500-'22-29,'22-28,23-29
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.788 C2=0.989
Domain overlap (PFAM):
C1:
NO
A:
PF0006920=Pkinase=PD(4.8=53.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGCAAACATGGCTCAGAA
R:
GCTGCTGGAGACAAGCCTTAG
Band lengths:
168-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]