MmuEX0041135 @ mm9
Exon Skipping
Gene
ENSMUSG00000028049 | Scamp3
Description
secretory carrier membrane protein 3 [Source:MGI Symbol;Acc:MGI:1346346]
Coordinates
chr3:88981395-88983145:+
Coord C1 exon
chr3:88981395-88981579
Coord A exon
chr3:88981912-88981989
Coord C2 exon
chr3:88983017-88983145
Length
78 bp
Sequences
Splice sites
3' ss Seq
AGCCCCGTCTCTGCTCTCAGGAC
3' ss Score
9.26
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AATTGGAGCACAGGGAAGCGAGTGGACCAAGCACACCGGAGGGAGTTCTTTGGGCCGCCACCGCCGTACTGCCGGGGCAGGGGCGTGTAGGGCAGGGGCGGCCGGGTTCACTTGCAAACATGGCTCAGAGCAGAGACACCGGGAATCCATTCCCCGACTCCGGCGAGCTTGACAATCCCTTTCAG
Seq A exon
GACCCAGCTGTGATCCAGCACCGACCCAGCCAGCAGTATGCCACGCTGGACGTCTACAACCCCTTTGAGAACCGAGAG
Seq C2 exon
CCCCCACCAGCCTACGAGCCTCCTGCTCCAGCCCCAGCACCTCTACCGCCACCCTCAGCTCCCTCTGTACAGTCCTCAAGAAAGCTCAGCCCCACAGAGCCCAGGAACTACGGCTCCTACAGCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028049-'0-3,'0-1,1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF049918=LicD=PU(26.4=67.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTCACTTGCAAACATGGC
R:
GGGCTGAGCTTTCTTGAGGAC
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: