DreEX0064342 @ danRer10
Exon Skipping
Gene
ENSDARG00000016765 | scamp3
Description
secretory carrier membrane protein 3 [Source:ZFIN;Acc:ZDB-GENE-041114-33]
Coordinates
chr19:9064430-9071106:+
Coord C1 exon
chr19:9064430-9066713
Coord A exon
chr19:9069321-9069404
Coord C2 exon
chr19:9070999-9071106
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTTTCCTCTATATTTGCAGGAT
3' ss Score
9.98
5' ss Seq
GCGGTAAAT
5' ss Score
6.76
Exon sequences
Seq C1 exon
ATCTTTTTACGCAACATGGCAACACCGCTGTCATGTGATATGAACACATTTCCTGTACAGCAGCGATACACAAGCGCTGTCAGAGTAAAATCGAAACAAAACCGTGTCGCTTGTCAAATTTAACAAAGGGAAATACATAAACAGTTGATAATACCAAAGAAGACTGAAAACCACTGTAAAAAAGGGACAGTATGTGCTAACGTTACTGATTTGAAACGGACACCTGACGTCTCGCTGTAATGTTGGTCGGTTAGCTAGTTAGTGTTAACCGGTTGCGGCGTGATTTGTTTTGCTTGAATTGTGTTATAATAACTAGGAACTTACCGAACTGGATTGAGGTTTACCGGTAATTATCCGCTAAACAACACTGTTTCGCTTTGTATCTGGTCATCGCCTTTGAGTTAAACCTGTTTTTACATCTTGGCGAGATCTAAACCAGCACCAAGATGTCAAAATACACAACTTTTCCCGATTCGTCTGATGATCATAACCCATTTCAG
Seq A exon
GATCCATCAGTGACTCAGCACAGCAGCAACACTGGCTATGCCACGCTGGACCTCTACAACCCATTCGACAACAACCAAACAGCG
Seq C2 exon
CCTCCACCTCCCTATGAAGCCACATCTCCTGCTGCGCCCCCTGCCCAAACGCCTCCCAGCAGGACCACGCCAACTGAACCCAGGAACTATGGATCCTACGGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016765-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGATCTAAACCAGCACC
R:
TAGTTCCTGGGTTCAGTTGGC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]