BtaEX6015458 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007909 | NOTCH2
Description
notch 2 [Source:HGNC Symbol;Acc:HGNC:7882]
Coordinates
chr3:23452162-23455299:+
Coord C1 exon
chr3:23452162-23452281
Coord A exon
chr3:23452707-23452859
Coord C2 exon
chr3:23455071-23455299
Length
153 bp
Sequences
Splice sites
3' ss Seq
CATTGCCCCTTTGTTTCCAGGTC
3' ss Score
10.87
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GCAAGAACTGTCAGACCGTATTGGCTCCCTGTTCCCCAAACCCTTGTGAGAATGCTGGTGTTTGCAAAGAGGCACCAAATTTTGAGAGTTACTCCTGCCTGTGTGCTCCTGGCTGGCAAG
Seq A exon
GTCAGCGGTGTACCATCGACATTGATGAGTGTGTCTCCAAGCCCTGCATGAACCACGGTCTCTGCCATAACACCCAGGGCAGCTACATGTGTGAATGTCCTCCAGGCTTCAGTGGCATGGACTGTGAGGAGGACATTGATGACTGCCTTGCCA
Seq C2 exon
ATCCTTGCCAGAATGGAGGTTCCTGTGTAGATGGAGTGAATACTTTCTCCTGCCTGTGCCTTCCGGGCTTCACTGGGGATAAATGTCAGACAGACATGAATGAGTGTCTGAGTGAGCCCTGTAAGAACGGAGGAACCTGCTCTGACTATGTCAACAGTTACACCTGCAAGTGCCCGGCGGGATTTGATGGAGTCCACTGTGAGAACAACATTGACGAGTGCACTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007909-'26-26,'26-25,27-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(90.9=73.2)
A:
PF0000822=EGF=PD(6.1=3.8),PF0000822=EGF=WD(100=57.7),PF0000822=EGF=PU(9.7=5.8)
C2:
PF0000822=EGF=PD(87.1=35.1),PF0000822=EGF=WD(100=40.3),PF0000822=EGF=PU(9.7=3.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGGCTCCCTGTTCCCCAA
R:
TAGTCAGAGCAGGTTCCTCCG
Band lengths:
250-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]