RnoEX6010760 @ rn6
Exon Skipping
Gene
ENSRNOG00000018835 | Notch2
Description
notch 2 [Source:RGD Symbol;Acc:3188]
Coordinates
chr2:200286921-200292564:+
Coord C1 exon
chr2:200286921-200287040
Coord A exon
chr2:200287409-200287561
Coord C2 exon
chr2:200292336-200292564
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCCTTACCCTTTCTTTATAGGTC
3' ss Score
11.4
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GCAAGAATTGTCAAACGGTGTTGGCGCCCTGCTCCCCTAACCCGTGTGAGAACGCTGCAGTTTGTAAAGAGGCACCCAACTTTGAGAGCTTCACCTGCCTGTGTGCCCCTGGCTGGCAAG
Seq A exon
GTCAGCGCTGTACAGTTGACGTTGATGAGTGTGTCTCCAAGCCGTGTATGAACAATGGCATCTGCCATAATACTCAGGGCAGCTACATGTGCGAGTGCCCTCCCGGCTTCAGTGGTATGGACTGTGAGGAGGACATCAATGACTGCCTTGCCA
Seq C2 exon
ACCCCTGCCAGAACGGAGGCTCCTGTGTGGACAAAGTGAACACCTTCTCCTGCCTGTGCCTTCCTGGCTTCGTAGGGGACAAGTGCCAAACAGACATGAATGAATGTCTGAGCGAGCCCTGTAAGAATGGGGGGACCTGCTCTGACTACGTCAACAGCTACACCTGCACGTGCCCTGCGGGCTTCCATGGAGTCCACTGTGAAAACAACATCGATGAGTGCACTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018835-'27-24,'27-23,28-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(90.9=73.2)
A:
PF0000822=EGF=PD(6.1=3.8),PF0000822=EGF=WD(100=57.7),PF0000822=EGF=PU(9.7=5.8)
C2:
PF0000822=EGF=PD(87.1=35.1),PF0000822=EGF=WD(100=40.3),PF0000822=EGF=PU(9.7=3.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCCAACTTTGAGAGCTT
R:
CACAGTGGACTCCATGGAAGC
Band lengths:
251-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]