MmuEX6072808 @ mm9
Exon Skipping
Gene
ENSMUSG00000027878 | Notch2
Description
Notch gene homolog 2 (Drosophila) [Source:MGI Symbol;Acc:MGI:97364]
Coordinates
chr3:97920624-97924878:+
Coord C1 exon
chr3:97920624-97920743
Coord A exon
chr3:97921116-97921268
Coord C2 exon
chr3:97924650-97924878
Length
153 bp
Sequences
Splice sites
3' ss Seq
TCATTCTCCTGTCTTCATAGGTA
3' ss Score
10.82
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GCAAGAACTGTCAAACAGTGTTGGCTCCCTGTTCCCCAAACCCGTGTGAGAATGCTGCTGTTTGTAAAGAGGCACCCAATTTTGAGAGCTTCAGCTGCTTGTGTGCTCCTGGCTGGCAAG
Seq A exon
GTAAACGATGTACAGTTGACGTTGATGAGTGTATCTCCAAGCCGTGTATGAACAATGGTGTCTGCCACAACACTCAGGGCAGCTACGTGTGTGAGTGTCCTCCCGGCTTCAGTGGGATGGACTGTGAAGAGGACATCAATGATTGCCTTGCCA
Seq C2 exon
ACCCCTGCCAGAACGGAGGCTCCTGTGTGGACCATGTGAATACCTTCTCCTGCCAGTGCCATCCTGGCTTCATAGGGGACAAGTGCCAGACAGACATGAATGAGTGTCTGAGCGAGCCCTGTAAGAATGGGGGGACCTGCTCCGACTATGTCAACAGTTACACCTGCACATGCCCTGCGGGCTTCCACGGAGTCCACTGTGAAAACAACATTGACGAGTGCACTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027878-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(6.5=4.9),PF0000822=EGF=PU(90.9=73.2)
A:
PF0000822=EGF=PD(6.1=3.8),PF0764510=EGF_CA=WD(100=73.1),PF0000822=EGF=PU(9.7=5.8)
C2:
PF0000822=EGF=PD(87.1=35.1),PF0000822=EGF=WD(100=40.3),PF0000822=EGF=PU(9.7=3.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAACAGTGTTGGCTCCC
R:
CCATTCTTACAGGGCTCGCTC
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: