GgaEX6043602 @ galGal3
Exon Skipping
Gene
ENSGALG00000002922 | NOTCH2
Description
NA
Coordinates
chr8:4238745-4242073:+
Coord C1 exon
chr8:4238745-4238869
Coord A exon
chr8:4238980-4239132
Coord C2 exon
chr8:4241845-4242073
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTGCACTCTGTGTTTTTCAGGGG
3' ss Score
9.68
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TCCAGGTGTGAACTGCCAGGTAGTGGTTGCACCATGTTCCCCCGACCCTTGTGAGAACTCGGGAATTTGCCAAGAGTCTCCTGATTCCGAAGGCTACACCTGCCAGTGTGCCCCTGGCTGGGAAG
Seq A exon
GGGAGAGGTGTACAGTGGATATTGATGAATGTCTCTCAAAGCCCTGCAAAAATCATGCTTTGTGCCATAATATTCAAGGCAGTTACCTGTGTGAATGTCGTCCAGGCTTCACTGGAGGAGACTGTGACAGTAACATTGATGACTGCCTGTCTA
Seq C2 exon
ATCCCTGCCAAAATGGAGCTTCATGTGTGGATGGGATAAACTCTTTCTCATGCATTTGCCTACCTGGATTTCATGGAGATAAATGTCAAACAGATACCAATGAATGTCTGAGTGAACCGTGCAGGAATGGAGGCACGTGCACCCACTATGTCAACAGCTACACGTGCAAGTGTCAGCCTGGGTTTGAGGGAACCAACTGTGAGAACAACATCGATGAATGCACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002922-'21-28,'21-27,22-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PU(90.9=69.8)
A:
PF0000822=EGF=PD(6.1=3.8),PF0764510=EGF_CA=WD(100=75.0),PF0000822=EGF=PU(9.7=5.8)
C2:
PF0000822=EGF=PD(87.1=35.1),PF0000822=EGF=WD(100=40.3),PF0000822=EGF=PU(9.7=3.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTGAACTGCCAGGTAGT
R:
CATTCCTGCACGGTTCACTCA
Band lengths:
251-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]