BtaEX6016122 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34320843-34322216:-
Coord C1 exon
chr3:34322036-34322216
Coord A exon
chr3:34321629-34321725
Coord C2 exon
chr3:34320843-34320944
Length
97 bp
Sequences
Splice sites
3' ss Seq
TAGGAGCTCTCATTTGGCAGGCG
3' ss Score
2.74
5' ss Seq
TAGGTGAAA
5' ss Score
1.84
Exon sequences
Seq C1 exon
GGTAGGAAAATGTCCGTGTGCACTGACAATGTCACCGACCTCCGGATCCCCGAGGGTGAGTCAGGTTTCTCCAAACCCATCACAGCCTACGTGTGCCAGGCGATCATCATTCCCCCAGAGGTGACAGGCTACAAGGCCGGGGTGTCCTCGCAGCCTGTCAGCCTCGCAGACCGGCTTATCG
Seq A exon
GCGTGACAACAGATATGACTCTGGATGGCATCACCTCCCCGGCTGAACTTTTCCACCCGGAGTCCCTGGGAATACCGGACGTGATCTTCTTTTATAG
Seq C2 exon
GTCCAATGATGTGACCCAGTCTTGCAGCTCTGGGAGATCAACTACCATCCGAGTCAGATGCAGTCCACTCAAGCCTGCTCCTGGAAGTCTGTCTCTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAACCCATCACAGCCTACG
R:
TGGACTGCATCTGACTCGGAT
Band lengths:
178-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]