RnoEX6011116 @ rn6
Exon Skipping
Gene
ENSRNOG00000020272 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr2:211250449-211252268:-
Coord C1 exon
chr2:211252088-211252268
Coord A exon
chr2:211250945-211251041
Coord C2 exon
chr2:211250449-211250550
Length
97 bp
Sequences
Splice sites
3' ss Seq
CGGGAGCTCTGGTTTGACAGGAG
3' ss Score
2.88
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGAAAAAAGATGTCTGTATGCACAGACAATGTCACTGACCTCCGGATCCCTGAGGGCGAGGCCGGTTTCTCTAAGTCCGTCACAGCCTATGTCTGCCAGGTGGTCATCATCCCCTCTGAGGTGATGGGCTACAAGGCTGGGGTATCCTCACAGCCAGTCAGCCTTGCTGACAGACTTGTTG
Seq A exon
GAGTGTCAATAGACATGGCTTTGGAAGGAATCGTCTCCCCAGCTGAACTTTTTCACCCAGAGACCCCAGGGATCCCGGACGTAGTCTTCTTTTTCAG
Seq C2 exon
ATCCAATGATGTGACTCAGTCCTGCAGCTCTGGAAGATCAACCACCATTCGTCTCAGATGCAACCCCATGAAACCTACACCTGGTACCCTTCGGCTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020272-'28-22,'28-21,29-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCACTGACCTCCGGATCC
R:
GCTGCAGGACTGAGTCACATC
Band lengths:
181-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]