DreEX0067002 @ danRer10
Exon Skipping
Gene
ENSDARG00000042899 | si:ch211-163l21.8
Description
si:ch211-163l21.8 [Source:ZFIN;Acc:ZDB-GENE-041008-93]
Coordinates
chr8:23781265-23782374:+
Coord C1 exon
chr8:23781265-23781415
Coord A exon
chr8:23782057-23782150
Coord C2 exon
chr8:23782273-23782374
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCAAAACGTTTTACACTCAGGAG
3' ss Score
4.62
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGCAGGGCTGTTGCATCCTGTGTGGAGAATGTGACTGAAAGCAAGAGGGAGGTGAAAGGATATATCTGTCAGTCCACGGTAGTACCTTCTGAGATCAGGGGTCAAAGTGTTGTGTCCTCTCAGCCCTTCAGTATTGGAGACACTTTAATCG
Seq A exon
GAGTGACTACCGAGTCCAAACTTGATGACATTTCATCATTTGTTGACAACTTTCCTGTTGAATCAGACCTGCCTGATGTTATTTTTTACTACAG
Seq C2 exon
GTCTAGAGAAACTACACAAGCGTGCAAAAATGGAAGATCATCCTCCATTCGGCTGCGATGTGATCCCAGTGTTACAGTGAAAAACTATATTTCTCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042899-'15-19,'15-18,16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF053256=DUF730=PU(0.1=0.0)
C2:
PF053256=DUF730=PU(45.9=97.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAAGCAAGAGGGAGGTG
R:
GCCGAATGGAGGATGATCTTCC
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]