MmuEX6073428 @ mm10
Exon Skipping
Gene
ENSMUSG00000040412 | 5330417C22Rik
Description
RIKEN cDNA 5330417C22 gene [Source:MGI Symbol;Acc:MGI:1923930]
Coordinates
chr3:108462890-108464435:-
Coord C1 exon
chr3:108464255-108464435
Coord A exon
chr3:108463470-108463566
Coord C2 exon
chr3:108462890-108462991
Length
97 bp
Sequences
Splice sites
3' ss Seq
TGGGAGCTCTGGTTTGACAGGAG
3' ss Score
3.17
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGGAAAAAAATGGCTGTGTGCACAGACAATGTCACTGACCTCCGGATCCCTGATGGTGAGGCCGGCTTCTCTAAGTCCGTCACAGCCTATGTCTGCCAGGTTGTCATCATCCCCTCTGAGGTGATGGGCTACAAGGCCGGGGTGTCCTCACAGCCCGTCAGCCTTGCTGACCGACTTGTTG
Seq A exon
GAGTGTCAACAGACATGACCTTGGAAGGAATCGTCTCCCCAGTTGAACTTTTTCACCCAGAGACCTCGGGAATTCCGGACATAGTCTTCTTTTTTAG
Seq C2 exon
ATCCAATGATGTGACCCAGTCCTGCAGTTCTGGAAGATCAACCACCATCCGCCTCAGATGCAATCCAATGAAAGCTGCTCCTGGCACCCTGCGGCTACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040412-'30-29,'30-26,33-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTATGTCTGCCAGGTTG
R:
ATTGGATTGCATCTGAGGCGG
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types