BtaEX6016218 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35648753-35654050:+
Coord C1 exon
chr3:35648753-35648848
Coord A exon
chr3:35652235-35652303
Coord C2 exon
chr3:35653964-35654050
Length
69 bp
Sequences
Splice sites
3' ss Seq
AAACCGTATCTTCCAAATAGGAG
3' ss Score
7.39
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAATGTTCTAAAAGAGCAAACAATGGGAAATTTACTCTTCGAGATTTGCTTGTGGTTCCTATGCAGCGTGTTTTGAAGTATCACCTTCTCCTTCAG
Seq A exon
GAGCTGGTCAAACATACCACTGATCCTATGGAGAAGGCAAATCTGAAACTGGCTCTTGATGCAATGAAG
Seq C2 exon
GACTTGGCACAATATGTGAATGAAGTGAAAAGAGATAATGAGACCCTTCGTGAAATTAAACAGTTTCAGCTATCTATAGAAAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575-'15-18,'15-17,16-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(17.7=100)
A:
PF0062115=RhoGEF=FE(12.6=100)
C2:
PF0062115=RhoGEF=PD(4.0=24.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTAAAAGAGCAAACAATGGGA
R:
GATAGCTGAAACTGTTTAATTTCACG
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]