RnoEX6011170 @ rn6
Exon Skipping
Gene
ENSRNOG00000020485 | Vav3
Description
vav guanine nucleotide exchange factor 3 [Source:RGD Symbol;Acc:1565941]
Coordinates
chr2:212417108-212422778:+
Coord C1 exon
chr2:212417108-212417203
Coord A exon
chr2:212420957-212421025
Coord C2 exon
chr2:212422692-212422778
Length
69 bp
Sequences
Splice sites
3' ss Seq
AACCTGGGTCTTCCAAATAGGAG
3' ss Score
6.97
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAATGTTCAAAGAGAGCCAATAATGGGAAATTTACTCTGCGTGATTTGCTGGTAGTTCCCATGCAGCGGGTGCTGAAATATCACCTCCTCCTTCAG
Seq A exon
GAGCTGGTTAAACACACCCATGATCCCATGGAGAAGTCGAACCTGAAGCTGGCTCTGGATGCAATGAAG
Seq C2 exon
GACTTGGCACAATATGTGAATGAAGTAAAAAGAGATAATGAGACCCTTCGTGAAATTAAGCAGTTTCAGCTATCTATAGAAAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020485-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(17.7=100)
A:
PF0062115=RhoGEF=FE(12.6=100)
C2:
PF0062115=RhoGEF=PD(4.0=24.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTTCAAAGAGAGCCAATAATG
R:
AGCTGAAACTGCTTAATTTCACGA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]