GgaEX1063003 @ galGal4
Exon Skipping
Gene
ENSGALG00000001915 | VAV3
Description
guanine nucleotide exchange factor VAV3 [Source:RefSeq peptide;Acc:NP_996745]
Coordinates
chr8:987129-1107865:-
Coord C1 exon
chr8:1107739-1107865
Coord A exon
chr8:1067216-1067284
Coord C2 exon
chr8:987129-989393
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTAACTATTTTTGTCAATAGGAG
3' ss Score
7.84
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TTTCCCTTAGTTTCTCTGCTTGAAGAACATAAGGACTTTTCTTTCGGCATGTTGTGAAATATTTGGGATGAAGAAAAGTGAACTTTTTGAAGCATTCGATTTGTTTGATGTGAGAGACTTCGGAAAG
Seq A exon
GAGCTGGTAAAGCACACTACAGATCCCATGGAGAAAGCAAATCTAAAACTGGCACTTGATGCAATGAAG
Seq C2 exon
GTGGGCTGGTTTCCATCTACTTATGTTGAAGAAGATGAATGAATTAAAAACTTTTCTCTGCTGACCAGCAATTTCAGGGATTGTAGAATTTAATAACTTCAAGCATTAATGGTCTTGTTAAGTACTTAGGCAGCAGCATTTTCTGTCTGAACCTTCTAGTCTTATTGTTGGGATTTATAAAGAACTTTGTACTAGCAGATTATTACCTTGCCCAGAGCTGTGCAAGAAACAACCTGCCACTTTGCTGTCACTGGGGATCAGTACAAAGTCTGGCGCTCACCTTTCCAGAAGATTTCAGGAAAACAAATTTCTTTATTCTTTTTCATTTTTTCACACTGTACTACACCATGAATAGTAGCTATGGCTGAATGTTTAATAAGTCTGTTTTCTTCTAGCTAACATCTGTGATGGTACGAGGAGATGAAGGCTTATTATTCCTTATCACTGCATGCAGAAAGCGTAGTTCAGTCATTCAGGTGGGCATAAACTGTAGTCAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915_MULTIEX1-9/26=C1-26
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF119713=CAMSAP_CH=PD(75.6=87.2)
A:
PF0062115=RhoGEF=FE(12.6=100)
C2:
PF0765312=SH3_2=PD(20.4=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGATGTGAGAGACTTCGGA
R:
AGACAGAAAATGCTGCTGCCT
Band lengths:
174-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]