GgaEX1063003 @ galGal3
Exon Skipping
Gene
ENSGALG00000001915 | Q8UUX6_CHICK
Description
NA
Coordinates
chr8:1070582-1074705:-
Coord C1 exon
chr8:1074610-1074705
Coord A exon
chr8:1072826-1072894
Coord C2 exon
chr8:1070582-1070668
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTAACTATTTTTGTCAATAGGAG
3' ss Score
7.84
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GAATGTTCCAAGAGGGCCAATAATGGGAAATTTACTTTGCGGGATCTTTTAGTGGTTCCAATGCAAAGAGTGCTAAAATACCACCTACTGCTCCAG
Seq A exon
GAGCTGGTAAAGCACACTACAGATCCCATGGAGAAAGCAAATCTAAAACTGGCACTTGATGCAATGAAG
Seq C2 exon
GACTTGGCTCAGTATGTAAATGAAGTGAAGAGAGATAATGAAACACTCCGTGAAATTAGACAATTTCAACTATCAATAGAGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915-'13-17,'13-16,14-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(17.7=100)
A:
PF0062115=RhoGEF=FE(12.6=100)
C2:
PF0062115=RhoGEF=PD(4.0=24.1),PF0063014=Filamin=PU(5.7=69.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGTTCCAAGAGGGCCAAT
R:
AAATTGTCTAATTTCACGGAGTGT
Band lengths:
162-231
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]