BtaEX6016222 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031575 | VAV3
Description
vav 3 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:12659]
Coordinates
chr3:35636270-35641444:+
Coord C1 exon
chr3:35636270-35636362
Coord A exon
chr3:35638422-35638490
Coord C2 exon
chr3:35641341-35641444
Length
69 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTCTCTCCTGGTAGTAT
3' ss Score
8.51
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
AAATGTCCAGAAAATGATATACGAAGTTGCTGCCTAGCAGAAATTAAGCAGACAGAAGAAAAATATACAGAAACACTGGAGTCAATAGAAAAA
Seq A exon
TATTTCATGGCACCATTGAAAAGATTTCTGACAGCAGCAGAATTTGATTCAGTATTCATCAACATTCCT
Seq C2 exon
GAACTTGTGAAAGTTCATCGGAACCTAATGCAAGAGATTCATGATTCCATTGTGAATAAAAATGACCAGAACTTGTATCAAGTTTTCATTAACTACAAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031575-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PU(11.4=64.5)
A:
PF0062115=RhoGEF=FE(12.6=100)
C2:
PF0062115=RhoGEF=FE(19.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCAGAAAATGATATACGAAGTT
R:
ACAAGTTCTGGTCATTTTTATTCACA
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]