GgaEX1062982 @ galGal3
Exon Skipping
Gene
ENSGALG00000001915 | Q8UUX6_CHICK
Description
NA
Coordinates
chr8:1077996-1081964:-
Coord C1 exon
chr8:1081872-1081964
Coord A exon
chr8:1081706-1081774
Coord C2 exon
chr8:1077996-1078099
Length
69 bp
Sequences
Splice sites
3' ss Seq
TATGTTTTTTTTCCCTGCAGTTT
3' ss Score
11.24
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
AAACATACTGAAAATGATGTAAGAAGTTGTTGTCTTGCTGAAATAAAACAAACTGAAGAGAAATACACTGAAACTCTGGAATCAATAGAGAAA
Seq A exon
TTTTTTATGGTGCCATTGAAAAGGTTTATGTCAGCATCAGAGTTTGAAACTGTTTTCATCAACATTCCT
Seq C2 exon
GACTTGGTGAAAATTCACAGGAGTCTAACACAGGACATCAGTGATTCCATTATTAACAAAAACGATCAGAACTTGTATCAAATTTTTATTAACTACAAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001915-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PU(11.4=64.5)
A:
PF0062115=RhoGEF=FE(12.6=100)
C2:
PF0062115=RhoGEF=FE(19.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTAAGAAGTTGTTGTCTTGCTG
R:
TGATACAAGTTCTGATCGTTTTTGT
Band lengths:
159-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]